#!/usr/bin/env bashset -euo pipefailAPP=openscience MUTED='\033[0;2m'RED='\033[0;31m'ORANGE='\033[38;5;214m'NC='\033[0m' # No Color usage() { cat <<EOFOpenScience Installer Usage: install [options] Options: -h, --help Display this help message -v, --version <version> Install a specific version (e.g., 1.0.180) -b, --binary <path> Install from a local binary instead of downloading --no-modify-path Don't modify shell config files (.zshrc, .bashrc, etc.) --no-atlas Don't offer to install the Atlas CLI companion Examples: curl -fsSL https://openscience.sh/install | bash curl -fsSL https://openscience.sh/install | bash -s -- --version 1.0.180 ./install --binary /path/to/openscienceEOF} requested_version=${VERSION:-}no_modify_path=falseno_atlas=falsebinary_path="" while [[ $# -gt 0 ]]; do case "$1" in -h|--help) usage exit 0 ;; -v|--version) if [[ -n "${2:-}" ]]; then requested_version="$2" shift 2 else echo -e "${RED}Error: --version requires a version argument${NC}" exit 1 fi ;; -b|--binary) if [[ -n "${2:-}" ]]; then binary_path="$2" shift 2 else echo -e "${RED}Error: --binary requires a path argument${NC}" exit 1 fi ;; --no-modify-path) no_modify_path=true shift ;; --no-atlas) no_atlas=true shift ;; *) echo -e "${ORANGE}Warning: Unknown option '$1'${NC}" >&2 shift ;; esacdone INSTALL_DIR=$HOME/.openscience/binmkdir -p "$INSTALL_DIR" # If --binary is provided, skip all download/detection logicif [ -n "$binary_path" ]; then if [ ! -f "$binary_path" ]; then echo -e "${RED}Error: Binary not found at ${binary_path}${NC}" exit 1 fi specific_version="local"else raw_os=$(uname -s) os=$(echo "$raw_os" | tr '[:upper:]' '[:lower:]') case "$raw_os" in Darwin*) os="darwin" ;; Linux*) os="linux" ;; MINGW*|MSYS*|CYGWIN*) os="windows" ;; esac arch=$(uname -m) if [[ "$arch" == "aarch64" ]]; then arch="arm64" fi if [[ "$arch" == "x86_64" ]]; then arch="x64" fi if [ "$os" = "darwin" ] && [ "$arch" = "x64" ]; then rosetta_flag=$(sysctl -n sysctl.proc_translated 2>/dev/null || echo 0) if [ "$rosetta_flag" = "1" ]; then arch="arm64" fi fi combo="$os-$arch" case "$combo" in linux-x64|linux-arm64|darwin-x64|darwin-arm64|windows-x64) ;; *) echo -e "${RED}Unsupported OS/Arch: $os/$arch${NC}" exit 1 ;; esac archive_ext=".zip" if [ "$os" = "linux" ]; then archive_ext=".tar.gz" fi is_musl=false if [ "$os" = "linux" ]; then if [ -f /etc/alpine-release ]; then is_musl=true fi if command -v ldd >/dev/null 2>&1; then if ldd --version 2>&1 | grep -qi musl; then is_musl=true fi fi fi needs_baseline=false if [ "$arch" = "x64" ]; then if [ "$os" = "linux" ]; then if ! grep -qi avx2 /proc/cpuinfo 2>/dev/null; then needs_baseline=true fi fi if [ "$os" = "darwin" ]; then avx2=$(sysctl -n hw.optional.avx2_0 2>/dev/null || echo 0) if [ "$avx2" != "1" ]; then needs_baseline=true fi fi fi target="$os-$arch" if [ "$needs_baseline" = "true" ]; then target="$target-baseline" fi if [ "$is_musl" = "true" ]; then target="$target-musl" fi filename="$APP-$target$archive_ext" if [ "$os" = "linux" ]; then if ! command -v tar >/dev/null 2>&1; then echo -e "${RED}Error: 'tar' is required but not installed.${NC}" exit 1 fi else if ! command -v unzip >/dev/null 2>&1; then echo -e "${RED}Error: 'unzip' is required but not installed.${NC}" exit 1 fi fi if [ -z "$requested_version" ]; then url="https://github.com/synthetic-sciences/OpenScience/releases/latest/download/$filename" # The || fallback keeps set -e from killing the script inside the # assignment when curl fails, so the message below can print. specific_version=$(curl -fsS https://api.github.com/repos/synthetic-sciences/OpenScience/releases/latest | sed -n 's/.*"tag_name": *"v\([^"]*\)".*/\1/p') || specific_version="" if [[ -z "$specific_version" ]]; then echo -e "${RED}Failed to fetch version information${NC}" exit 1 fi else # Strip leading 'v' if present requested_version="${requested_version#v}" url="https://github.com/synthetic-sciences/OpenScience/releases/download/v${requested_version}/$filename" specific_version=$requested_version # Verify the release exists before downloading http_status=$(curl -sI -o /dev/null -w "%{http_code}" "https://github.com/synthetic-sciences/OpenScience/releases/tag/v${requested_version}") if [ "$http_status" = "404" ]; then echo -e "${RED}Error: Release v${requested_version} not found${NC}" echo -e "${MUTED}Available releases: https://github.com/synthetic-sciences/OpenScience/releases${NC}" exit 1 fi fifi print_message() { local level=$1 local message=$2 local color="" case $level in info) color="${NC}" ;; warning) color="${NC}" ;; error) color="${RED}" ;; esac echo -e "${color}${message}${NC}"} check_version() { if command -v openscience >/dev/null 2>&1; then openscience_path=$(which openscience) ## Check the installed version installed_version=$(openscience --version 2>/dev/null || echo "") if [[ "$installed_version" != "$specific_version" ]]; then print_message info "${MUTED}Installed version: ${NC}$installed_version." else print_message info "${MUTED}Version ${NC}$specific_version${MUTED} already installed" exit 0 fi fi} unbuffered_sed() { if echo | sed -u -e "" >/dev/null 2>&1; then sed -nu "$@" elif echo | sed -l -e "" >/dev/null 2>&1; then sed -nl "$@" else local pad="$(printf "\n%512s" "")" sed -ne "s/$/\\${pad}/" "$@" fi} print_progress() { local bytes="$1" local length="$2" [ "$length" -gt 0 ] || return 0 local width=50 local percent=$(( bytes * 100 / length )) [ "$percent" -gt 100 ] && percent=100 local on=$(( percent * width / 100 )) local off=$(( width - on )) local filled=$(printf "%*s" "$on" "") filled=${filled// /■} local empty=$(printf "%*s" "$off" "") empty=${empty// /･} printf "\r${ORANGE}%s%s %3d%%${NC}" "$filled" "$empty" "$percent" >&4} download_with_progress() { local url="$1" local output="$2" if [ -t 2 ]; then exec 4>&2 else exec 4>/dev/null fi local tmp_dir=${TMPDIR:-/tmp} local basename="${tmp_dir}/openscience_install_$$" local tracefile="${basename}.trace" rm -f "$tracefile" mkfifo "$tracefile" # Hide cursor printf "\033[?25l" >&4 trap "trap - RETURN; rm -f \"$tracefile\"; printf '\033[?25h' >&4; exec 4>&-" RETURN ( curl --trace-ascii "$tracefile" -f -s -L -o "$output" "$url" ) & local curl_pid=$! unbuffered_sed \ -e 'y/ACDEGHLNORTV/acdeghlnortv/' \ -e '/^0000: content-length:/p' \ -e '/^<= recv data/p' \ "$tracefile" | \ { local length=0 local bytes=0 while IFS=" " read -r -a line; do [ "${#line[@]}" -lt 2 ] && continue local tag="${line[0]} ${line[1]}" if [ "$tag" = "0000: content-length:" ]; then length="${line[2]}" length=$(echo "$length" | tr -d '\r') bytes=0 elif [ "$tag" = "<= recv" ]; then local size="${line[3]}" bytes=$(( bytes + size )) if [ "$length" -gt 0 ]; then print_progress "$bytes" "$length" fi fi done } wait $curl_pid local ret=$? echo "" >&4 return $ret} download_and_install() { print_message info "\n${MUTED}Installing ${NC}openscience ${MUTED}version: ${NC}$specific_version" local tmp_dir="${TMPDIR:-/tmp}/openscience_install_$$" mkdir -p "$tmp_dir" if [[ "$os" == "windows" ]] || ! [ -t 2 ] || ! download_with_progress "$url" "$tmp_dir/$filename"; then # Fallback to standard curl on Windows, non-TTY environments, or if custom progress fails curl -f -# -L -o "$tmp_dir/$filename" "$url" fi # Without -f curl saves the error body ("Not Found") and exits 0, and the # user gets a cryptic unzip/tar failure. Catch a missing/empty download # here with a real message instead. if [ ! -s "$tmp_dir/$filename" ]; then echo -e "${RED}Download failed: $url${NC}" rm -rf "$tmp_dir" exit 1 fi # Verify against the release's checksums.txt when a sha256 tool exists. # Releases published before checksums.txt simply skip verification. local shatool="" if command -v sha256sum >/dev/null 2>&1; then shatool="sha256sum" elif command -v shasum >/dev/null 2>&1; then shatool="shasum -a 256" fi if [ -n "$shatool" ]; then local checksums_url="${url%/*}/checksums.txt" local expected expected=$(curl -fsSL "$checksums_url" 2>/dev/null | awk -v f="$filename" '$2 == f {print $1}') || expected="" if [ -n "$expected" ]; then local actual actual=$($shatool "$tmp_dir/$filename" | awk '{print $1}') if [ "$actual" != "$expected" ]; then echo -e "${RED}Checksum mismatch for ${filename}${NC}" echo -e "${MUTED}expected: ${expected}${NC}" echo -e "${MUTED}actual: ${actual}${NC}" rm -rf "$tmp_dir" exit 1 fi print_message info "${MUTED}Checksum verified${NC}" fi fi if [ "$os" = "linux" ]; then tar -xzf "$tmp_dir/$filename" -C "$tmp_dir" else unzip -q "$tmp_dir/$filename" -d "$tmp_dir" fi # Bun --compile appends .exe for win32 targets, so the archive entry is # openscience.exe there. Git Bash resolves `openscience` to the .exe. local bin_name="openscience" if [ "$os" = "windows" ]; then bin_name="openscience.exe" fi mv "$tmp_dir/$bin_name" "$INSTALL_DIR" chmod 755 "${INSTALL_DIR}/${bin_name}" rm -rf "$tmp_dir"} install_from_binary() { print_message info "\n${MUTED}Installing ${NC}openscience ${MUTED}from: ${NC}$binary_path" cp "$binary_path" "${INSTALL_DIR}/openscience" chmod 755 "${INSTALL_DIR}/openscience"} if [ -n "$binary_path" ]; then install_from_binaryelse check_version download_and_installfi add_to_path() { local config_file=$1 local command=$2 if grep -Fxq "$command" "$config_file"; then print_message info "Command already exists in $config_file, skipping write." elif [[ -w $config_file ]]; then echo -e "\n# openscience" >> "$config_file" echo "$command" >> "$config_file" print_message info "${MUTED}Successfully added ${NC}openscience ${MUTED}to \$PATH in ${NC}$config_file" else print_message warning "Manually add the directory to $config_file (or similar):" print_message info " $command" fi} XDG_CONFIG_HOME=${XDG_CONFIG_HOME:-$HOME/.config} current_shell=$(basename "$SHELL")case $current_shell in fish) config_files="$HOME/.config/fish/config.fish" ;; zsh) config_files="${ZDOTDIR:-$HOME}/.zshrc ${ZDOTDIR:-$HOME}/.zshenv $XDG_CONFIG_HOME/zsh/.zshrc $XDG_CONFIG_HOME/zsh/.zshenv" ;; bash) config_files="$HOME/.bashrc $HOME/.bash_profile $HOME/.profile $XDG_CONFIG_HOME/bash/.bashrc $XDG_CONFIG_HOME/bash/.bash_profile" ;; ash) config_files="$HOME/.ashrc $HOME/.profile /etc/profile" ;; sh) config_files="$HOME/.ashrc $HOME/.profile /etc/profile" ;; *) # Default case if none of the above matches config_files="$HOME/.bashrc $HOME/.bash_profile $XDG_CONFIG_HOME/bash/.bashrc $XDG_CONFIG_HOME/bash/.bash_profile" ;;esac if [[ "$no_modify_path" != "true" ]]; then config_file="" for file in $config_files; do if [[ -f $file ]]; then config_file=$file break fi done if [[ -z $config_file ]]; then print_message warning "No config file found for $current_shell. You may need to manually add to PATH:" print_message info " export PATH=$INSTALL_DIR:\$PATH" elif [[ ":$PATH:" != *":$INSTALL_DIR:"* ]]; then case $current_shell in fish) add_to_path "$config_file" "fish_add_path $INSTALL_DIR" ;; zsh) add_to_path "$config_file" "export PATH=$INSTALL_DIR:\$PATH" ;; bash) add_to_path "$config_file" "export PATH=$INSTALL_DIR:\$PATH" ;; ash) add_to_path "$config_file" "export PATH=$INSTALL_DIR:\$PATH" ;; sh) add_to_path "$config_file" "export PATH=$INSTALL_DIR:\$PATH" ;; *) export PATH=$INSTALL_DIR:$PATH print_message warning "Manually add the directory to $config_file (or similar):" print_message info " export PATH=$INSTALL_DIR:\$PATH" ;; esac fifi if [ "${GITHUB_ACTIONS-}" == "true" ] && [ -n "${GITHUB_PATH-}" ]; then echo "$INSTALL_DIR" >> "$GITHUB_PATH" print_message info "Added $INSTALL_DIR to \$GITHUB_PATH"fi # An `openscience` from another package manager can sit earlier on PATH and# shadow this install — most commonly the deprecated @synsci/cli npm package,# whose stale bin link also blocks `npm i -g @synsci/openscience` with EEXIST.shadow=$(command -v openscience 2>/dev/null || true)if [[ -n "$shadow" && "$shadow" != "$INSTALL_DIR/openscience" ]]; then print_message warning "Another openscience binary at ${shadow} may shadow this install." print_message info "${MUTED}If it was installed by npm (the deprecated ${NC}@synsci/cli${MUTED} package), remove it with:${NC}" print_message info " npm rm -g @synsci/cli"fi # Offer the Atlas CLI companion (research graph — maps, runs, shared library).# Piping via curl|bash makes stdin the script itself, so prompt on /dev/tty.# Skips when non-interactive, in CI, already installed, or opted out.if [ "$no_atlas" != true ] && [ -z "${OPENSCIENCE_NO_ATLAS:-}" ] && [ -z "${CI:-}" ] \ && [ -t 1 ] && [ -r /dev/tty ] && ! command -v atlas >/dev/null 2>&1; then echo -e "" echo -e "${MUTED}Atlas is Synthetic Sciences' research graph — maps, runs, and a shared library.${NC}" printf "Install the Atlas CLI companion too? [y/N] " read -r atlas_reply </dev/tty || atlas_reply="" case "$atlas_reply" inLines 1–500 of 525. Load more
#!/usr/bin/env bash set -euo pipefail APP=openscience MUTED='\033[0;2m' RED='\033[0;31m' ORANGE='\033[38;5;214m' NC='\033[0m' # No Color usage() { cat <<EOF OpenScience Installer Usage: install [options] Options: -h, --help Display this help message -v, --version <version> Install a specific version (e.g., 1.0.180) -b, --binary <path> Install from a local binary instead of downloading --no-modify-path Don't modify shell config files (.zshrc, .bashrc, etc.) --no-atlas Don't offer to install the Atlas CLI companion Examples: curl -fsSL https://openscience.sh/install | bash curl -fsSL https://openscience.sh/install | bash -s -- --version 1.0.180 ./install --binary /path/to/openscience EOF } requested_version=${VERSION:-} no_modify_path=false no_atlas=false binary_path="" while [[ $# -gt 0 ]]; do case "$1" in -h|--help) usage exit 0 ;; -v|--version) if [[ -n "${2:-}" ]]; then requested_version="$2" shift 2 else echo -e "${RED}Error: --version requires a version argument${NC}" exit 1 fi ;; -b|--binary) if [[ -n "${2:-}" ]]; then binary_path="$2" shift 2 else echo -e "${RED}Error: --binary requires a path argument${NC}" exit 1 fi ;; --no-modify-path) no_modify_path=true shift ;; --no-atlas) no_atlas=true shift ;; *) echo -e "${ORANGE}Warning: Unknown option '$1'${NC}" >&2 shift ;; esac done INSTALL_DIR=$HOME/.openscience/bin mkdir -p "$INSTALL_DIR" # If --binary is provided, skip all download/detection logic if [ -n "$binary_path" ]; then if [ ! -f "$binary_path" ]; then echo -e "${RED}Error: Binary not found at ${binary_path}${NC}" exit 1 fi specific_version="local" else raw_os=$(uname -s) os=$(echo "$raw_os" | tr '[:upper:]' '[:lower:]') case "$raw_os" in Darwin*) os="darwin" ;; Linux*) os="linux" ;; MINGW*|MSYS*|CYGWIN*) os="windows" ;; esac arch=$(uname -m) if [[ "$arch" == "aarch64" ]]; then arch="arm64" fi if [[ "$arch" == "x86_64" ]]; then arch="x64" fi if [ "$os" = "darwin" ] && [ "$arch" = "x64" ]; then rosetta_flag=$(sysctl -n sysctl.proc_translated 2>/dev/null || echo 0) if [ "$rosetta_flag" = "1" ]; then arch="arm64" fi fi combo="$os-$arch" case "$combo" in linux-x64|linux-arm64|darwin-x64|darwin-arm64|windows-x64) ;; *) echo -e "${RED}Unsupported OS/Arch: $os/$arch${NC}" exit 1 ;; esac archive_ext=".zip" if [ "$os" = "linux" ]; then archive_ext=".tar.gz" fi is_musl=false if [ "$os" = "linux" ]; then if [ -f /etc/alpine-release ]; then is_musl=true fi if command -v ldd >/dev/null 2>&1; then if ldd --version 2>&1 | grep -qi musl; then is_musl=true fi fi fi needs_baseline=false if [ "$arch" = "x64" ]; then if [ "$os" = "linux" ]; then if ! grep -qi avx2 /proc/cpuinfo 2>/dev/null; then needs_baseline=true fi fi if [ "$os" = "darwin" ]; then avx2=$(sysctl -n hw.optional.avx2_0 2>/dev/null || echo 0) if [ "$avx2" != "1" ]; then needs_baseline=true fi fi fi target="$os-$arch" if [ "$needs_baseline" = "true" ]; then target="$target-baseline" fi if [ "$is_musl" = "true" ]; then target="$target-musl" fi filename="$APP-$target$archive_ext" if [ "$os" = "linux" ]; then if ! command -v tar >/dev/null 2>&1; then echo -e "${RED}Error: 'tar' is required but not installed.${NC}" exit 1 fi else if ! command -v unzip >/dev/null 2>&1; then echo -e "${RED}Error: 'unzip' is required but not installed.${NC}" exit 1 fi fi if [ -z "$requested_version" ]; then url="https://github.com/synthetic-sciences/OpenScience/releases/latest/download/$filename" # The || fallback keeps set -e from killing the script inside the # assignment when curl fails, so the message below can print. specific_version=$(curl -fsS https://api.github.com/repos/synthetic-sciences/OpenScience/releases/latest | sed -n 's/.*"tag_name": *"v\([^"]*\)".*/\1/p') || specific_version="" if [[ -z "$specific_version" ]]; then echo -e "${RED}Failed to fetch version information${NC}" exit 1 fi else # Strip leading 'v' if present requested_version="${requested_version#v}" url="https://github.com/synthetic-sciences/OpenScience/releases/download/v${requested_version}/$filename" specific_version=$requested_version # Verify the release exists before downloading http_status=$(curl -sI -o /dev/null -w "%{http_code}" "https://github.com/synthetic-sciences/OpenScience/releases/tag/v${requested_version}") if [ "$http_status" = "404" ]; then echo -e "${RED}Error: Release v${requested_version} not found${NC}" echo -e "${MUTED}Available releases: https://github.com/synthetic-sciences/OpenScience/releases${NC}" exit 1 fi fi fi print_message() { local level=$1 local message=$2 local color="" case $level in info) color="${NC}" ;; warning) color="${NC}" ;; error) color="${RED}" ;; esac echo -e "${color}${message}${NC}" } check_version() { if command -v openscience >/dev/null 2>&1; then openscience_path=$(which openscience) ## Check the installed version installed_version=$(openscience --version 2>/dev/null || echo "") if [[ "$installed_version" != "$specific_version" ]]; then print_message info "${MUTED}Installed version: ${NC}$installed_version." else print_message info "${MUTED}Version ${NC}$specific_version${MUTED} already installed" exit 0 fi fi } unbuffered_sed() { if echo | sed -u -e "" >/dev/null 2>&1; then sed -nu "$@" elif echo | sed -l -e "" >/dev/null 2>&1; then sed -nl "$@" else local pad="$(printf "\n%512s" "")" sed -ne "s/$/\\${pad}/" "$@" fi } print_progress() { local bytes="$1" local length="$2" [ "$length" -gt 0 ] || return 0 local width=50 local percent=$(( bytes * 100 / length )) [ "$percent" -gt 100 ] && percent=100 local on=$(( percent * width / 100 )) local off=$(( width - on )) local filled=$(printf "%*s" "$on" "") filled=${filled// /■} local empty=$(printf "%*s" "$off" "") empty=${empty// /･} printf "\r${ORANGE}%s%s %3d%%${NC}" "$filled" "$empty" "$percent" >&4 } download_with_progress() { local url="$1" local output="$2" if [ -t 2 ]; then exec 4>&2 else exec 4>/dev/null fi local tmp_dir=${TMPDIR:-/tmp} local basename="${tmp_dir}/openscience_install_$$" local tracefile="${basename}.trace" rm -f "$tracefile" mkfifo "$tracefile" # Hide cursor printf "\033[?25l" >&4 trap "trap - RETURN; rm -f \"$tracefile\"; printf '\033[?25h' >&4; exec 4>&-" RETURN ( curl --trace-ascii "$tracefile" -f -s -L -o "$output" "$url" ) & local curl_pid=$! unbuffered_sed \ -e 'y/ACDEGHLNORTV/acdeghlnortv/' \ -e '/^0000: content-length:/p' \ -e '/^<= recv data/p' \ "$tracefile" | \ { local length=0 local bytes=0 while IFS=" " read -r -a line; do [ "${#line[@]}" -lt 2 ] && continue local tag="${line[0]} ${line[1]}" if [ "$tag" = "0000: content-length:" ]; then length="${line[2]}" length=$(echo "$length" | tr -d '\r') bytes=0 elif [ "$tag" = "<= recv" ]; then local size="${line[3]}" bytes=$(( bytes + size )) if [ "$length" -gt 0 ]; then print_progress "$bytes" "$length" fi fi done } wait $curl_pid local ret=$? echo "" >&4 return $ret } download_and_install() { print_message info "\n${MUTED}Installing ${NC}openscience ${MUTED}version: ${NC}$specific_version" local tmp_dir="${TMPDIR:-/tmp}/openscience_install_$$" mkdir -p "$tmp_dir" if [[ "$os" == "windows" ]] || ! [ -t 2 ] || ! download_with_progress "$url" "$tmp_dir/$filename"; then # Fallback to standard curl on Windows, non-TTY environments, or if custom progress fails curl -f -# -L -o "$tmp_dir/$filename" "$url" fi # Without -f curl saves the error body ("Not Found") and exits 0, and the # user gets a cryptic unzip/tar failure. Catch a missing/empty download # here with a real message instead. if [ ! -s "$tmp_dir/$filename" ]; then echo -e "${RED}Download failed: $url${NC}" rm -rf "$tmp_dir" exit 1 fi # Verify against the release's checksums.txt when a sha256 tool exists. # Releases published before checksums.txt simply skip verification. local shatool="" if command -v sha256sum >/dev/null 2>&1; then shatool="sha256sum" elif command -v shasum >/dev/null 2>&1; then shatool="shasum -a 256" fi if [ -n "$shatool" ]; then local checksums_url="${url%/*}/checksums.txt" local expected expected=$(curl -fsSL "$checksums_url" 2>/dev/null | awk -v f="$filename" '$2 == f {print $1}') || expected="" if [ -n "$expected" ]; then local actual actual=$($shatool "$tmp_dir/$filename" | awk '{print $1}') if [ "$actual" != "$expected" ]; then echo -e "${RED}Checksum mismatch for ${filename}${NC}" echo -e "${MUTED}expected: ${expected}${NC}" echo -e "${MUTED}actual: ${actual}${NC}" rm -rf "$tmp_dir" exit 1 fi print_message info "${MUTED}Checksum verified${NC}" fi fi if [ "$os" = "linux" ]; then tar -xzf "$tmp_dir/$filename" -C "$tmp_dir" else unzip -q "$tmp_dir/$filename" -d "$tmp_dir" fi # Bun --compile appends .exe for win32 targets, so the archive entry is # openscience.exe there. Git Bash resolves `openscience` to the .exe. local bin_name="openscience" if [ "$os" = "windows" ]; then bin_name="openscience.exe" fi mv "$tmp_dir/$bin_name" "$INSTALL_DIR" chmod 755 "${INSTALL_DIR}/${bin_name}" rm -rf "$tmp_dir" } install_from_binary() { print_message info "\n${MUTED}Installing ${NC}openscience ${MUTED}from: ${NC}$binary_path" cp "$binary_path" "${INSTALL_DIR}/openscience" chmod 755 "${INSTALL_DIR}/openscience" } if [ -n "$binary_path" ]; then install_from_binary else check_version download_and_install fi add_to_path() { local config_file=$1 local command=$2 if grep -Fxq "$command" "$config_file"; then print_message info "Command already exists in $config_file, skipping write." elif [[ -w $config_file ]]; then echo -e "\n# openscience" >> "$config_file" echo "$command" >> "$config_file" print_message info "${MUTED}Successfully added ${NC}openscience ${MUTED}to \$PATH in ${NC}$config_file" else print_message warning "Manually add the directory to $config_file (or similar):" print_message info " $command" fi } XDG_CONFIG_HOME=${XDG_CONFIG_HOME:-$HOME/.config} current_shell=$(basename "$SHELL") case $current_shell in fish) config_files="$HOME/.config/fish/config.fish" ;; zsh) config_files="${ZDOTDIR:-$HOME}/.zshrc ${ZDOTDIR:-$HOME}/.zshenv $XDG_CONFIG_HOME/zsh/.zshrc $XDG_CONFIG_HOME/zsh/.zshenv" ;; bash) config_files="$HOME/.bashrc $HOME/.bash_profile $HOME/.profile $XDG_CONFIG_HOME/bash/.bashrc $XDG_CONFIG_HOME/bash/.bash_profile" ;; ash) config_files="$HOME/.ashrc $HOME/.profile /etc/profile" ;; sh) config_files="$HOME/.ashrc $HOME/.profile /etc/profile" ;; *) # Default case if none of the above matches config_files="$HOME/.bashrc $HOME/.bash_profile $XDG_CONFIG_HOME/bash/.bashrc $XDG_CONFIG_HOME/bash/.bash_profile" ;; esac if [[ "$no_modify_path" != "true" ]]; then config_file="" for file in $config_files; do if [[ -f $file ]]; then config_file=$file break fi done if [[ -z $config_file ]]; then print_message warning "No config file found for $current_shell. You may need to manually add to PATH:" print_message info " export PATH=$INSTALL_DIR:\$PATH" elif [[ ":$PATH:" != *":$INSTALL_DIR:"* ]]; then case $current_shell in fish) add_to_path "$config_file" "fish_add_path $INSTALL_DIR" ;; zsh) add_to_path "$config_file" "export PATH=$INSTALL_DIR:\$PATH" ;; bash) add_to_path "$config_file" "export PATH=$INSTALL_DIR:\$PATH" ;; ash) add_to_path "$config_file" "export PATH=$INSTALL_DIR:\$PATH" ;; sh) add_to_path "$config_file" "export PATH=$INSTALL_DIR:\$PATH" ;; *) export PATH=$INSTALL_DIR:$PATH print_message warning "Manually add the directory to $config_file (or similar):" print_message info " export PATH=$INSTALL_DIR:\$PATH" ;; esac fi fi if [ "${GITHUB_ACTIONS-}" == "true" ] && [ -n "${GITHUB_PATH-}" ]; then echo "$INSTALL_DIR" >> "$GITHUB_PATH" print_message info "Added $INSTALL_DIR to \$GITHUB_PATH" fi # An `openscience` from another package manager can sit earlier on PATH and # shadow this install — most commonly the deprecated @synsci/cli npm package, # whose stale bin link also blocks `npm i -g @synsci/openscience` with EEXIST. shadow=$(command -v openscience 2>/dev/null || true) if [[ -n "$shadow" && "$shadow" != "$INSTALL_DIR/openscience" ]]; then print_message warning "Another openscience binary at ${shadow} may shadow this install." print_message info "${MUTED}If it was installed by npm (the deprecated ${NC}@synsci/cli${MUTED} package), remove it with:${NC}" print_message info " npm rm -g @synsci/cli" fi # Offer the Atlas CLI companion (research graph — maps, runs, shared library). # Piping via curl|bash makes stdin the script itself, so prompt on /dev/tty. # Skips when non-interactive, in CI, already installed, or opted out. if [ "$no_atlas" != true ] && [ -z "${OPENSCIENCE_NO_ATLAS:-}" ] && [ -z "${CI:-}" ] \ && [ -t 1 ] && [ -r /dev/tty ] && ! command -v atlas >/dev/null 2>&1; then echo -e "" echo -e "${MUTED}Atlas is Synthetic Sciences' research graph — maps, runs, and a shared library.${NC}" printf "Install the Atlas CLI companion too? [y/N] " read -r atlas_reply </dev/tty || atlas_reply="" case "$atlas_reply" in