import type { Connector, ConnectorHit } from "../types"import { getJSON } from "../http"import { asText, clampLimit, snippet, stripTags } from "./util" /** A single entry inside a Reactome search result group. */interface ReactomeEntry { id?: string stId?: string dbId?: number | string name?: string exactType?: string species?: string[] summation?: string} interface ReactomeSearch { results?: Array<{ typeName?: string; entries?: ReactomeEntry[] }>} const CONTENT = "https://reactome.org/ContentService" /** * Reactome ContentService — curated, peer-reviewed human pathways, reactions, * and molecular events. Fully open, no key required. */export const reactome: Connector = { id: "reactome", name: "Reactome", domain: "biology", description: "Curated biological pathways, reactions, and molecular events.", homepage: "https://reactome.org", async search(query, opts) { const limit = clampLimit(opts?.limit, 10, 25) const params = new URLSearchParams({ query, cluster: "true" }) const species = asText(opts?.organism) if (species) params.set("species", species) const url = `${CONTENT}/search/query?${params.toString()}` const data = await getJSON<ReactomeSearch>(url, { signal: opts?.signal }).catch(() => ({}) as ReactomeSearch) const hits: ConnectorHit[] = [] for (const group of data.results ?? []) { for (const entry of group.entries ?? []) { const id = entry.stId ?? entry.id ?? (entry.dbId != null ? String(entry.dbId) : undefined) if (!id) continue hits.push({ id, title: stripTags(entry.name) || id, summary: snippet(stripTags(entry.summation)) ?? entry.exactType, url: `https://reactome.org/content/detail/${encodeURIComponent(id)}`, extra: { ...entry, typeName: group.typeName }, }) if (hits.length >= limit) return hits } } return hits }, async fetch(id, opts) { const url = `${CONTENT}/data/query/${encodeURIComponent(id)}` return getJSON(url, { signal: opts?.signal }).catch(() => null) },}
import type { Connector, ConnectorHit } from "../types"
import { getJSON } from "../http"
import { asText, clampLimit, snippet, stripTags } from "./util"
/** A single entry inside a Reactome search result group. */
interface ReactomeEntry {
id?: string
stId?: string
dbId?: number | string
name?: string
exactType?: string
species?: string[]
summation?: string
}
interface ReactomeSearch {
results?: Array<{ typeName?: string; entries?: ReactomeEntry[] }>
}
const CONTENT = "https://reactome.org/ContentService"
/**
* Reactome ContentService — curated, peer-reviewed human pathways, reactions,
* and molecular events. Fully open, no key required.
*/
export const reactome: Connector = {
id: "reactome",
name: "Reactome",
domain: "biology",
description: "Curated biological pathways, reactions, and molecular events.",
homepage: "https://reactome.org",
async search(query, opts) {
const limit = clampLimit(opts?.limit, 10, 25)
const params = new URLSearchParams({ query, cluster: "true" })
const species = asText(opts?.organism)
if (species) params.set("species", species)
const url = `${CONTENT}/search/query?${params.toString()}`
const data = await getJSON<ReactomeSearch>(url, { signal: opts?.signal }).catch(() => ({}) as ReactomeSearch)
const hits: ConnectorHit[] = []
for (const group of data.results ?? []) {
for (const entry of group.entries ?? []) {
const id = entry.stId ?? entry.id ?? (entry.dbId != null ? String(entry.dbId) : undefined)
if (!id) continue
hits.push({
id,
title: stripTags(entry.name) || id,
summary: snippet(stripTags(entry.summation)) ?? entry.exactType,
url: `https://reactome.org/content/detail/${encodeURIComponent(id)}`,
extra: { ...entry, typeName: group.typeName },
})
if (hits.length >= limit) return hits
}
}
return hits
},
async fetch(id, opts) {
const url = `${CONTENT}/data/query/${encodeURIComponent(id)}`
return getJSON(url, { signal: opts?.signal }).catch(() => null)
},
}