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import z from "zod"import { spawn } from "child_process"import { Tool } from "./tool"import path from "path"import DESCRIPTION from "./bash.txt"import { Log } from "../util/log"import { Instance } from "../project/instance"import { lazy } from "@/util/lazy"import { Language } from "web-tree-sitter" import { $ } from "bun"import { Filesystem } from "@/util/filesystem"import { fileURLToPath } from "url"import { Flag } from "@/flag/flag.ts"import { Shell } from "@/shell/shell" import { BashArity } from "@/permission/arity"import { Truncate } from "./truncation"import { OpenScience } from "@/openscience" const MAX_METADATA_LENGTH = 30_000const DEFAULT_TIMEOUT = Flag.OPENSCIENCE_EXPERIMENTAL_BASH_DEFAULT_TIMEOUT_MS || 0 export const log = Log.create({ service: "bash-tool" }) const resolveWasm = (asset: string) => {  if (asset.startsWith("file://")) return fileURLToPath(asset)  if (asset.startsWith("/") || /^[a-z]:/i.test(asset)) return asset  const url = new URL(asset, import.meta.url)  return fileURLToPath(url)} const parser = lazy(async () => {  const { Parser } = await import("web-tree-sitter")  const { default: treeWasm } = await import("web-tree-sitter/tree-sitter.wasm" as string, {    with: { type: "wasm" },  })  const treePath = resolveWasm(treeWasm)  await Parser.init({    locateFile() {      return treePath    },  })  const { default: bashWasm } = await import("tree-sitter-bash/tree-sitter-bash.wasm" as string, {    with: { type: "wasm" },  })  const bashPath = resolveWasm(bashWasm)  const bashLanguage = await Language.load(bashPath)  const p = new Parser()  p.setLanguage(bashLanguage)  return p}) // TODO: we may wanna rename this tool so it works better on other shellsexport const BashTool = Tool.define("bash", async () => {  const shell = Shell.acceptable()  log.info("bash tool using shell", { shell })   return {    description: DESCRIPTION.replaceAll("${directory}", Instance.directory)      .replaceAll("${maxLines}", String(Truncate.MAX_LINES))      .replaceAll("${maxBytes}", String(Truncate.MAX_BYTES)),    parameters: z.object({      command: z.string().describe("The command to execute"),      timeout: z.number().describe("Optional timeout in milliseconds").optional(),      workdir: z        .string()        .describe(          `The working directory to run the command in. Defaults to ${Instance.directory}. Use this instead of 'cd' commands.`,        )        .optional(),      description: z        .string()        .describe(          "Clear, concise description of what this command does in 5-10 words. Examples:\nInput: ls\nOutput: Lists files in current directory\n\nInput: git status\nOutput: Shows working tree status\n\nInput: npm install\nOutput: Installs package dependencies\n\nInput: mkdir foo\nOutput: Creates directory 'foo'",        ),    }),    async execute(params, ctx) {      const cwd = params.workdir || Instance.directory      try {        const { existsSync, mkdirSync } = await import("fs")        if (!existsSync(cwd)) {          mkdirSync(cwd, { recursive: true })        }      } catch {}      if (params.timeout !== undefined && params.timeout < 0) {        throw new Error(`Invalid timeout value: ${params.timeout}. Timeout must be a positive number.`)      }      const timeout = params.timeout ?? DEFAULT_TIMEOUT      const tree = await parser().then((p) => p.parse(params.command))      if (!tree) {        throw new Error("Failed to parse command")      }      const directories = new Set<string>()      if (!Instance.containsPath(cwd)) directories.add(cwd)      const patterns = new Set<string>()      const always = new Set<string>()       for (const node of tree.rootNode.descendantsOfType("command")) {        if (!node) continue        const command = []        for (let i = 0; i < node.childCount; i++) {          const child = node.child(i)          if (!child) continue          if (            child.type !== "command_name" &&            child.type !== "word" &&            child.type !== "string" &&            child.type !== "raw_string" &&            child.type !== "concatenation"          ) {            continue          }          command.push(child.text)        }         // not an exhaustive list, but covers most common cases        if (["cd", "rm", "cp", "mv", "mkdir", "touch", "chmod", "chown", "cat"].includes(command[0])) {          for (const arg of command.slice(1)) {            if (arg.startsWith("-") || (command[0] === "chmod" && arg.startsWith("+"))) continue            const resolved = await $`realpath ${arg}`              .cwd(cwd)              .quiet()              .nothrow()              .text()              .then((x) => x.trim())            log.info("resolved path", { arg, resolved })            if (resolved) {              // Git Bash on Windows returns Unix-style paths like /c/Users/...              const normalized =                process.platform === "win32" && resolved.match(/^\/[a-z]\//)                  ? resolved.replace(/^\/([a-z])\//, (_, drive) => `${drive.toUpperCase()}:\\`).replace(/\//g, "\\")                  : resolved              if (!Instance.containsPath(normalized)) directories.add(normalized)            }          }        }         // cd covered by above check        if (command.length && command[0] !== "cd") {          patterns.add(command.join(" "))          always.add(BashArity.prefix(command).join(" ") + "*")        }      }       if (directories.size > 0) {        await ctx.ask({          permission: "external_directory",          patterns: Array.from(directories),          always: Array.from(directories).map((x) => path.dirname(x) + "*"),          metadata: {},        })      }       if (patterns.size > 0) {        await ctx.ask({          permission: "bash",          patterns: Array.from(patterns),          always: Array.from(always),          metadata: {},        })      }       // Seed the BYOK secret cache so redact() below masks the user's own      // provider keys (auth.json + shell env), not just synced managed ones.      await OpenScience.refreshByokSecrets(process.env).catch(() => {})       const proc = spawn(params.command, {        shell,        cwd,        env: await OpenScience.subprocessEnv(process.env),        stdio: ["ignore", "pipe", "pipe"],        detached: process.platform !== "win32",      })       let output = ""       // Initialize metadata with empty output      ctx.metadata({        metadata: {          output: "",          description: params.description,        },      })       const redact = (text: string) => {        try {          return OpenScience.redactSecrets(text)        } catch {          return text        }      }       const append = (chunk: Buffer) => {        output += chunk.toString()        const redacted = redact(output)        ctx.metadata({          metadata: {            output:              redacted.length > MAX_METADATA_LENGTH ? redacted.slice(0, MAX_METADATA_LENGTH) + "\n\n..." : redacted,            description: params.description,          },        })      }       proc.stdout?.on("data", append)      proc.stderr?.on("data", append)       let timedOut = false      let aborted = false      let exited = false       const kill = () => Shell.killTree(proc, { exited: () => exited })       if (ctx.abort.aborted) {        aborted = true        await kill()      }       const abortHandler = () => {        aborted = true        void kill()      }       ctx.abort.addEventListener("abort", abortHandler, { once: true })       const timeoutTimer =        timeout > 0          ? setTimeout(() => {              timedOut = true              void kill()            }, timeout + 100)          : undefined       await new Promise<void>((resolve, reject) => {        const cleanup = () => {          if (timeoutTimer) clearTimeout(timeoutTimer)          ctx.abort.removeEventListener("abort", abortHandler)        }         proc.once("exit", () => {          exited = true          cleanup()          resolve()        })         proc.once("error", (error) => {          exited = true          cleanup()          reject(error)        })      })       const resultMetadata: string[] = []       if (timedOut) {        resultMetadata.push(`bash tool terminated command after exceeding timeout ${timeout} ms`)      }       if (aborted) {        resultMetadata.push("User aborted the command")      }       if (resultMetadata.length > 0) {        output += "\n\n<bash_metadata>\n" + resultMetadata.join("\n") + "\n</bash_metadata>"      }       const redactedOutput = redact(output)      return {        title: params.description,        metadata: {          output:            redactedOutput.length > MAX_METADATA_LENGTH              ? redactedOutput.slice(0, MAX_METADATA_LENGTH) + "\n\n..."              : redactedOutput,          exit: proc.exitCode,          description: params.description,        },        output: redactedOutput,      }    },  }})